Research papers

Papers using BrainX.

Recent publications that use BrainX ecosystem tools — from large-scale brain dynamics simulation to differentiable modeling and brain-inspired learning. Listed newest first and grouped by year. If you've used BrainX in your work and don't see your paper here, let us know and we'll add it.

2026

Massimo Trusel, Junfeng Zuo, Danyal H. Alam, others

Holistic motor control of zebra finch song syllable sequences

Nature

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Jinzhao Wei, Licong Li, Jieshuo Zhang, Jianli Yang, Xiuling Liu

Computational modeling investigates the neural mechanisms underlying working memory updating impairments in depression

Brain Research Bulletin

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Aur Shalev Merin

Massive Redundancy in Gradient Transport Enables Sparse Online Learning

arXiv:2603.15195

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Baiyu Chen, Yujie Wu, Siyuan Xu, Peng Qu, Dehua Wu, Xu Chu, Haodong Bian, Shuo Zhang, Bo Xu, Youhui Zhang, Zhengyu Ma, Guoqi Li

BrainFuse: a unified infrastructure integrating realistic biological modeling and core AI methodology

arXiv:2601.21407

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Roel Koopman, Sebastian Otte, Sander M. Bohté

SpikingGamma: Surrogate-Gradient Free and Temporally Precise Online Training of Spiking Neural Networks with Smoothed Delays

arXiv:2602.01978

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2025

Zilong Ji, Tianhao Chu, Si Wu, others

A systems model of alternating theta sweeps via firing rate adaptation

Current Biology

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Changmin Yu, Zilong Ji, Jake Ormond

Hippocampal theta sweeps indicate goal direction

bioRxiv

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Lining Yin, Lanyun Cui, Ying Yu, Qingyun Wang

A Heterogeneous Attractor Model for Neural Dynamical Mechanism of Movement Preparation

International Journal of Neural Systems

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Anonymous

Controlling Epileptic Seizures through Hippocampal Regulation: A Complex Network Analysis

IEEE Transactions on Neural Systems and Rehabilitation Engineering

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Z. Ge, Xu He, Lingfei Mo, others

Boosting Brain-inspired Path Integration Efficiency via Learning-based Replication of Continuous Attractor Neurodynamics

arXiv:2511.17687

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Sicheng Shen, Dongcheng Zhao, Linghao Feng, others

STEP: A Unified Spiking Transformer Evaluation Platform for Fair and Reproducible Benchmarks

arXiv:2505.11151

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2024

Xuexing Du, Jennifer Crodelle, Victor J. Barranca

Biophysical modeling and experimental analysis of the dynamics of C. elegans body-wall muscle cells

bioRxiv

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