BrainX Ecosystem

Papers using BrainX.

Studies that use BrainX packages for brain simulation, differentiable modeling and brain-inspired learning, newest first.

Papers using BrainX18

2026

  1. Hippocampal theta sweeps indicate goal direction during navigation

    Changmin Yu, Zilong Ji, Jake Ormond, John O'Keefe, Neil Burgess

    Nature Neuroscience

  2. Holistic motor control of zebra finch song syllable sequences

    Massimo Trusel, Junfeng Zuo, Danyal H. Alam, others

    Nature Code for Holistic motor control of zebra finch song syllable sequences

  3. A thalamus–brainstem attractor network drives history-biased decisions

    Shan Zhao, Heying Shan, Xiao Liu, Yu Qian, Jingyao Huang, Yi-Ran Liu, Zhenfei Jiao, Lichen Ye, Lin Cong, Xiaoou Wang, Zhi-Yuan Wang, Danyang Li, Ming-Quan Chen, Kai Wang, Ling Fu, Xu-Fei Du, Si Wu, Yu Mu

    Nature Code for A thalamus–brainstem attractor network drives history-biased decisions

  4. Computational modeling investigates the neural mechanisms underlying working memory updating impairments in depression

    Jinzhao Wei, Licong Li, Jieshuo Zhang, Jianli Yang, Xiuling Liu

    Brain Research Bulletin: 111773

  5. Dynamical modulation of hippocampal replay through firing rate adaptation

    Zilong Ji, Tianhao Chu, Xingsi Dong, Changmin Yu, Daniel Bush, Neil Burgess, Si Wu

    Nature Communications Code for Dynamical modulation of hippocampal replay through firing rate adaptation

  6. Deep-learning-assisted simulation of a cortical circuit: integrating anatomy, physiology and function

    Shinya Ito, Darrell Haufler, Javier Galván Fraile, Kael Dai, Joseph Aman, Guozhang Chen, Claudio Mirasso, Wolfgang Maass, Anton Arkhipov

    bioRxiv: 2026–03

  7. A coupling network for brain computing: EI balanced embedding in dual-attractor dynamics systems

    Shunmin Yao, Ziyang Wang, Rui Zhu, Wen Cheng, Yuan Chai

    Brain Research Bulletin: 111788

2025

  1. A generalized Spiking Locally Competitive Algorithm for multiple optimization problems

    Xuexing Du, K Tian Zhong-qi, Songting Li, Douglas Zhou

    Neurocomputing, 624: 129392

  2. A systems model of alternating theta sweeps via firing rate adaptation

    Zilong Ji, Tianhao Chu, Si Wu, others

    Current Biology Code for A systems model of alternating theta sweeps via firing rate adaptation

  3. A Heterogeneous Attractor Model for Neural Dynamical Mechanism of Movement Preparation

    Lining Yin, Lanyun Cui, Ying Yu, Qingyun Wang

    International Journal of Neural Systems

  4. Controlling Epileptic Seizures through Hippocampal Regulation: A Complex Network Analysis in the Mouse Brain

    Xiaojun Zhou, Yuan Wang, Bailu Si

    IEEE Transactions on Neural Systems and Rehabilitation Engineering, 33: 4302–4314

  5. Phase Precession Relative to Turning Angle in Theta-Modulated Head Direction Cells

    Zilong Ji, Eleonora Lomi, Kate Jeffery, Anna S Mitchell, Neil Burgess

    Hippocampus, 35(2): e70008 Code for Phase Precession Relative to Turning Angle in Theta-Modulated Head Direction Cells

  6. Biophysical modeling and experimental analysis of the dynamics of C. elegans body-wall muscle cells

    Xuexing Du, Jennifer Crodelle, Victor James Barranca, Songting Li, Yunzhu Shi, Shangbang Gao, Douglas Zhou

    PLoS Computational Biology, 21(1): e1012318

  7. Physics-informed spiking neural networks for continuous-time dynamic systems

    Qinglai Wei, Qizhi Yang, Liyuan Han, Tielin Zhang

    Neurocomputing: 132192

  8. Scikit-neuromsi: a generalized framework for modeling multisensory integration

    Renato Paredes, Juan B Cabral, Peggy Seriès

    Neuroinformatics, 23(3): 40

2024

  1. Firing rate adaptation affords place cell theta sweeps, phase precession, and procession

    Tianhao Chu, Zilong Ji, Junfeng Zuo, Yuanyuan Mi, Wen-hao Zhang, Tiejun Huang, Daniel Bush, Neil Burgess, Si Wu

    Elife, 12: RP87055 Code for Firing rate adaptation affords place cell theta sweeps, phase precession, and procession

  2. Spindle oscillations emerge at the critical state of electrically coupled networks in the thalamic reticular nucleus

    Shangyang Li, Chaoming Wang, Si Wu

    Cell Reports, 43(10) Code for Spindle oscillations emerge at the critical state of electrically coupled networks in the thalamic reticular nucleus

  3. Spike Neural network of motor cortex model for arm reaching control

    Hongru Jiang, Xiangdong Bu, Xiaohong Sui, Huajin Tang, Xiaochuan Pan, Yao Chen

    2024 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC): 1–4

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