Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V A add() (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.MixIons method) AHP_De1994 (class in braincell.channel) AMPA (class in braincell.synapse) area (braincell.SingleCompartment property) B braincell module braincell.channel module braincell.ion module braincell.morph module braincell.quad module braincell.synapse module braincell.vis module C Ca_ZH2019_IO (class in braincell.channel) CaHT_HM1992 (class in braincell.channel) CaHT_Re1993 (class in braincell.channel) CaHVA_MA2020_GoC (class in braincell.channel) CaHVA_MA2020_GrC (class in braincell.channel) CaL_IS2008 (class in braincell.channel) Calcium (class in braincell.ion) CalciumDetailed (class in braincell.ion) CalciumFirstOrder (class in braincell.ion) CalciumFixed (class in braincell.ion) CalciumInitNernst (class in braincell.ion) CaN_IS2008 (class in braincell.channel) CaT_HM1992 (class in braincell.channel) CaT_HP1992 (class in braincell.channel) Cav1p2_MA2020 (class in braincell.channel) Cav1p3_MA2020 (class in braincell.channel) Cav2p3_MA2020_GoC (class in braincell.channel) Cav3p1_MA2020 (class in braincell.channel) Channel (class in braincell) channels (braincell.Ion attribute) (braincell.MixIons attribute) Ci (braincell.IonInfo attribute), [1] Co (braincell.IonInfo attribute), [1] compare_morphologies() (in module braincell.vis) compare_values() (in module braincell.vis) compute_derivative() (braincell.channel.K_Leak method) (braincell.channel.LeakageChannel method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.quad.DiffEqModule method) (braincell.SingleCompartment method) configure_defaults() (in module braincell.vis) current() (braincell.channel.AHP_De1994 method) (braincell.channel.Ca_ZH2019_IO method) (braincell.channel.CaHT_HM1992 method) (braincell.channel.CaHT_Re1993 method) (braincell.channel.CaHVA_MA2020_GoC method) (braincell.channel.CaHVA_MA2020_GrC method) (braincell.channel.CaL_IS2008 method) (braincell.channel.CaN_IS2008 method) (braincell.channel.CaT_HM1992 method) (braincell.channel.CaT_HP1992 method) (braincell.channel.Cav1p2_MA2020 method) (braincell.channel.Cav1p3_MA2020 method) (braincell.channel.Cav2p3_MA2020_GoC method) (braincell.channel.Cav3p1_MA2020 method) (braincell.channel.fKdr_SU2015_DCN method) (braincell.channel.HCN1_MA2020_GoC method) (braincell.channel.HCN1_MA2024_PC method) (braincell.channel.HCN1_MA2025_BC method) (braincell.channel.HCN1_RI2021_SC method) (braincell.channel.HCN2_MA2020_GoC method) (braincell.channel.HCN_HM1992 method) (braincell.channel.HCN_SU2015_DCN method) (braincell.channel.HCN_ZH2019_IO method) (braincell.channel.IL method) (braincell.channel.K_HH1952 method) (braincell.channel.K_Kv_test method) (braincell.channel.K_Leak method) (braincell.channel.K_TM1991 method) (braincell.channel.KA1_HM1992 method) (braincell.channel.KA2_HM1992 method) (braincell.channel.Kca1p1_MA2020 method) (braincell.channel.Kca2p2_MA2020 method) (braincell.channel.Kca3p1_MA2020 method) (braincell.channel.KDR_Ba2002 method) (braincell.channel.Kdr_ZH2019_IO method) (braincell.channel.Kir2p3_MA2020_GrC method) (braincell.channel.Kir2p3_MA2024_PC method) (braincell.channel.Kir2p3_MA2025_BC method) (braincell.channel.Kir2p3_RI2021_SC method) (braincell.channel.KK2A_HM1992 method) (braincell.channel.KK2B_HM1992 method) (braincell.channel.KM_MA2020_GoC method) (braincell.channel.KM_MA2020_GrC method) (braincell.channel.KM_RI2021_SC method) (braincell.channel.KNI_Ya1989 method) (braincell.channel.Kv1p1_MA2020_GoC method) (braincell.channel.Kv1p1_MA2020_GrC method) (braincell.channel.Kv1p1_MA2024_PC method) (braincell.channel.Kv1p1_MA2025_BC method) (braincell.channel.Kv1p1_RI2021_SC method) (braincell.channel.Kv2p2_0010_MA2020_GrC method) (braincell.channel.Kv3p4_MA2020_GoC method) (braincell.channel.Kv3p4_MA2020_GrC method) (braincell.channel.Kv3p4_MA2024_PC method) (braincell.channel.Kv3p4_MA2025_BC method) (braincell.channel.Kv3p4_RI2021_SC method) (braincell.channel.Kv4p3_MA2020_GoC method) (braincell.channel.Kv4p3_MA2020_GrC method) (braincell.channel.Kv4p3_MA2024_PC method) (braincell.channel.Kv4p3_MA2025_BC method) (braincell.channel.Kv4p3_RI2021_SC method) (braincell.channel.LeakageChannel method) (braincell.channel.Na_Ba2002 method) (braincell.channel.Na_HH1952 method) (braincell.channel.Na_TM1991 method) (braincell.channel.Na_ZH2019_IO method) (braincell.channel.NaF_SU2015_DCN method) (braincell.channel.NaFHF_MA2020_GrC method) (braincell.channel.NaP_SU2015_DCN method) (braincell.channel.Nav1p1_MA2025_BC method) (braincell.channel.Nav1p6_MA2020_GoC method) (braincell.channel.Nav_MA2020_GrC method) (braincell.channel.sKdr_SU2015_DCN method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) current_owner_type (braincell.channel.AHP_De1994 attribute) (braincell.channel.Kca1p1_MA2020 attribute) (braincell.channel.Kca2p2_MA2020 attribute) (braincell.channel.Kca3p1_MA2020 attribute) D derivative (braincell.quad.DiffEqState attribute) (braincell.quad.DiffEqState property) derivative() (braincell.ion.CalciumDetailed method) (braincell.ion.CalciumFirstOrder method) DiffEqModule (class in braincell.quad) DiffEqState (class in braincell.quad) diffrax_bosh3_step() (in module braincell.quad) diffrax_bwd_euler_step() (in module braincell.quad) diffrax_dopri5_step() (in module braincell.quad) diffrax_dopri8_step() (in module braincell.quad) diffrax_euler_step() (in module braincell.quad) diffrax_heun_step() (in module braincell.quad) diffrax_kvaerno3_step() (in module braincell.quad) diffrax_kvaerno4_step() (in module braincell.quad) diffrax_kvaerno5_step() (in module braincell.quad) diffrax_midpoint_step() (in module braincell.quad) diffrax_ralston_step() (in module braincell.quad) diffrax_tsit5_step() (in module braincell.quad) diffusion (braincell.quad.DiffEqState attribute) (braincell.quad.DiffEqState property) E E (braincell.IonInfo attribute), [1] euler_step() (in module braincell.quad) exp_euler_step() (in module braincell.quad) external_currents (braincell.Ion property) F fKdr_SU2015_DCN (class in braincell.channel) G GABAa (class in braincell.synapse) get_defaults() (in module braincell.vis) get_integrator() (in module braincell.quad) get_spike() (braincell.HHTypedNeuron method) H HCN1_MA2020_GoC (class in braincell.channel) HCN1_MA2024_PC (class in braincell.channel) HCN1_MA2025_BC (class in braincell.channel) HCN1_RI2021_SC (class in braincell.channel) HCN2_MA2020_GoC (class in braincell.channel) HCN_HM1992 (class in braincell.channel) HCN_SU2015_DCN (class in braincell.channel) HCN_ZH2019_IO (class in braincell.channel) heun2_step() (in module braincell.quad) heun3_step() (in module braincell.quad) HHTypedNeuron (class in braincell) I IL (class in braincell.channel) in_size (braincell.IonChannel attribute) ind_exp_euler_step() (in module braincell.quad) IndependentIntegration (class in braincell.quad) init_state() (braincell.channel.K_Leak method) (braincell.channel.LeakageChannel method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.SingleCompartment method) (braincell.synapse.AMPA method) (braincell.synapse.GABAa method) (braincell.synapse.NMDA method) Ion (class in braincell) ion_types (braincell.MixIons attribute) (braincell.MixIons property) IonChannel (class in braincell) IonInfo (class in braincell) ions (braincell.MixIons attribute) is_active() (braincell.vis.VisHooks method) K K_HH1952 (class in braincell.channel) K_Kv_test (class in braincell.channel) K_Leak (class in braincell.channel) K_TM1991 (class in braincell.channel) KA1_HM1992 (class in braincell.channel) KA2_HM1992 (class in braincell.channel) Kca1p1_MA2020 (class in braincell.channel) Kca2p2_MA2020 (class in braincell.channel) Kca3p1_MA2020 (class in braincell.channel) KDR_Ba2002 (class in braincell.channel) Kdr_ZH2019_IO (class in braincell.channel) Kir2p3_MA2020_GrC (class in braincell.channel) Kir2p3_MA2024_PC (class in braincell.channel) Kir2p3_MA2025_BC (class in braincell.channel) Kir2p3_RI2021_SC (class in braincell.channel) KK2A_HM1992 (class in braincell.channel) KK2B_HM1992 (class in braincell.channel) KM_MA2020_GoC (class in braincell.channel) KM_MA2020_GrC (class in braincell.channel) KM_RI2021_SC (class in braincell.channel) KNI_Ya1989 (class in braincell.channel) Kv1p1_MA2020_GoC (class in braincell.channel) Kv1p1_MA2020_GrC (class in braincell.channel) Kv1p1_MA2024_PC (class in braincell.channel) Kv1p1_MA2025_BC (class in braincell.channel) Kv1p1_RI2021_SC (class in braincell.channel) Kv2p2_0010_MA2020_GrC (class in braincell.channel) Kv3p4_MA2020_GoC (class in braincell.channel) Kv3p4_MA2020_GrC (class in braincell.channel) Kv3p4_MA2024_PC (class in braincell.channel) Kv3p4_MA2025_BC (class in braincell.channel) Kv3p4_RI2021_SC (class in braincell.channel) Kv4p3_MA2020_GoC (class in braincell.channel) Kv4p3_MA2020_GrC (class in braincell.channel) Kv4p3_MA2024_PC (class in braincell.channel) Kv4p3_MA2025_BC (class in braincell.channel) Kv4p3_RI2021_SC (class in braincell.channel) L LayoutCache (class in braincell.vis) LayoutConfig (class in braincell.vis) LeakageChannel (class in braincell.channel) M make_integration() (braincell.quad.IndependentIntegration method) midpoint_step() (in module braincell.quad) MixIons (class in braincell) module braincell braincell.channel braincell.ion braincell.morph braincell.quad braincell.synapse braincell.vis N n_compartment (braincell.HHTypedNeuron property) (braincell.SingleCompartment property) Na_Ba2002 (class in braincell.channel) Na_HH1952 (class in braincell.channel) Na_TM1991 (class in braincell.channel) Na_ZH2019_IO (class in braincell.channel) NaF_SU2015_DCN (class in braincell.channel) NaFHF_MA2020_GrC (class in braincell.channel) name (braincell.IonChannel attribute) NaP_SU2015_DCN (class in braincell.channel) Nav1p1_MA2025_BC (class in braincell.channel) Nav1p1_RI2021_SC (class in braincell.channel) Nav1p6_MA2020_GoC (class in braincell.channel) Nav1p6_MA2024_PC (class in braincell.channel) Nav1p6_MA2025_BC (class in braincell.channel) Nav1p6_RI2021_SC (class in braincell.channel) Nav_MA2020_GrC (class in braincell.channel) NMDA (class in braincell.synapse) O out_size (braincell.IonChannel attribute) OverlaySpec (class in braincell.vis) P pack_info() (braincell.Ion method) PickInfo (class in braincell.vis) plot2d() (in module braincell.vis) plot3d() (in module braincell.vis) plot_branch_order_histogram() (in module braincell.vis) plot_dendrogram() (in module braincell.vis) plot_movie() (in module braincell.vis) plot_sholl() (in module braincell.vis) plot_topology() (in module braincell.vis) plot_traces() (in module braincell.vis) pop_size (braincell.HHTypedNeuron property) (braincell.SingleCompartment property) post_integral() (braincell.channel.LeakageChannel method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.quad.DiffEqModule method) (braincell.SingleCompartment method) Potassium (class in braincell.ion) PotassiumFixed (class in braincell.ion) PotassiumInitNernst (class in braincell.ion) pre_integral() (braincell.channel.LeakageChannel method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.quad.DiffEqModule method) (braincell.SingleCompartment method) publication_theme() (in module braincell.vis) PublicationTheme (class in braincell.vis) R ralston2_step() (in module braincell.quad) ralston3_step() (in module braincell.quad) ralston4_step() (in module braincell.quad) register_external_current() (braincell.Ion method) reset_defaults() (in module braincell.vis) reset_state() (braincell.channel.K_Leak method) (braincell.channel.Kca1p1_MA2020 method) (braincell.channel.Kca2p2_MA2020 method) (braincell.channel.LeakageChannel method) (braincell.channel.Nav1p1_MA2025_BC method) (braincell.channel.Nav1p1_RI2021_SC method) (braincell.channel.Nav1p6_MA2025_BC method) (braincell.channel.Nav1p6_RI2021_SC method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.SingleCompartment method) (braincell.synapse.AMPA method) (braincell.synapse.GABAa method) (braincell.synapse.NMDA method) rk2_step() (in module braincell.quad) rk3_step() (in module braincell.quad) rk4_step() (in module braincell.quad) root_type (braincell.channel.Ca_ZH2019_IO attribute) (braincell.channel.CaHT_HM1992 attribute) (braincell.channel.CaHT_Re1993 attribute) (braincell.channel.CaHVA_MA2020_GoC attribute) (braincell.channel.CaHVA_MA2020_GrC attribute) (braincell.channel.CaL_IS2008 attribute) (braincell.channel.CaN_IS2008 attribute) (braincell.channel.CaT_HM1992 attribute) (braincell.channel.CaT_HP1992 attribute) (braincell.channel.Cav1p2_MA2020 attribute) (braincell.channel.Cav1p3_MA2020 attribute) (braincell.channel.Cav2p3_MA2020_GoC attribute) (braincell.channel.Cav3p1_MA2020 attribute) (braincell.channel.fKdr_SU2015_DCN attribute) (braincell.channel.HCN1_MA2020_GoC attribute) (braincell.channel.HCN1_MA2024_PC attribute) (braincell.channel.HCN1_MA2025_BC attribute) (braincell.channel.HCN1_RI2021_SC attribute) (braincell.channel.HCN2_MA2020_GoC attribute) (braincell.channel.HCN_HM1992 attribute) (braincell.channel.HCN_SU2015_DCN attribute) (braincell.channel.HCN_ZH2019_IO attribute) (braincell.channel.IL attribute) (braincell.channel.K_HH1952 attribute) (braincell.channel.K_Kv_test attribute) (braincell.channel.K_Leak attribute) (braincell.channel.K_TM1991 attribute) (braincell.channel.KA1_HM1992 attribute) (braincell.channel.KA2_HM1992 attribute) (braincell.channel.KDR_Ba2002 attribute) (braincell.channel.Kdr_ZH2019_IO attribute) (braincell.channel.Kir2p3_MA2020_GrC attribute) (braincell.channel.Kir2p3_MA2024_PC attribute) (braincell.channel.Kir2p3_MA2025_BC attribute) (braincell.channel.Kir2p3_RI2021_SC attribute) (braincell.channel.KK2A_HM1992 attribute) (braincell.channel.KK2B_HM1992 attribute) (braincell.channel.KM_MA2020_GoC attribute) (braincell.channel.KM_MA2020_GrC attribute) (braincell.channel.KM_RI2021_SC attribute) (braincell.channel.KNI_Ya1989 attribute) (braincell.channel.Kv1p1_MA2020_GoC attribute) (braincell.channel.Kv1p1_MA2020_GrC attribute) (braincell.channel.Kv1p1_MA2024_PC attribute) (braincell.channel.Kv1p1_MA2025_BC attribute) (braincell.channel.Kv1p1_RI2021_SC attribute) (braincell.channel.Kv2p2_0010_MA2020_GrC attribute) (braincell.channel.Kv3p4_MA2020_GoC attribute) (braincell.channel.Kv3p4_MA2020_GrC attribute) (braincell.channel.Kv3p4_MA2024_PC attribute) (braincell.channel.Kv3p4_MA2025_BC attribute) (braincell.channel.Kv3p4_RI2021_SC attribute) (braincell.channel.Kv4p3_MA2020_GoC attribute) (braincell.channel.Kv4p3_MA2020_GrC attribute) (braincell.channel.Kv4p3_MA2024_PC attribute) (braincell.channel.Kv4p3_MA2025_BC attribute) (braincell.channel.Kv4p3_RI2021_SC attribute) (braincell.channel.LeakageChannel attribute) (braincell.channel.Na_Ba2002 attribute) (braincell.channel.Na_HH1952 attribute) (braincell.channel.Na_TM1991 attribute) (braincell.channel.Na_ZH2019_IO attribute) (braincell.channel.NaF_SU2015_DCN attribute) (braincell.channel.NaFHF_MA2020_GrC attribute) (braincell.channel.NaP_SU2015_DCN attribute) (braincell.channel.Nav1p6_MA2020_GoC attribute) (braincell.channel.Nav_MA2020_GrC attribute) (braincell.channel.sKdr_SU2015_DCN attribute) (braincell.Ion attribute) (braincell.ion.Calcium attribute) (braincell.MixIons attribute) S save_figure() (in module braincell.vis) set_defaults() (in module braincell.vis) SingleCompartment (class in braincell) sKdr_SU2015_DCN (class in braincell.channel) Sodium (class in braincell.ion) SodiumFixed (class in braincell.ion) SodiumInitNernst (class in braincell.ion) ssprk3_step() (in module braincell.quad) T theme() (in module braincell.vis) U update() (braincell.SingleCompartment method) (braincell.synapse.AMPA method) (braincell.synapse.GABAa method) (braincell.synapse.NMDA method) uses_total_current (braincell.ion.CalciumDetailed attribute) (braincell.ion.CalciumFirstOrder attribute) V valence (braincell.IonInfo attribute), [1] values_spec() (braincell.vis.OverlaySpec method) ValueSpec (class in braincell.vis) varshape (braincell.IonChannel property) VisDefaults (class in braincell.vis) VisHooks (class in braincell.vis)
