Index A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | R | S | T | U | V | W A add() (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.MixIons method) AHP_De1994 (class in braincell.channel) all_integrators (in module braincell.quad) AllRegion (class in braincell.filter) AMPA (class in braincell.synapse) ApicalDendrite (class in braincell) area (braincell.Branch property) (braincell.SingleCompartment property) areas (braincell.Branch property) as_dict() (braincell.io.NeuroMorphoMeasurement method) (braincell.quad.IntegratorRegistry method) AscIssue (class in braincell.io) AscMetadata (class in braincell.io) AscReader (class in braincell.io) AscReport (class in braincell.io) AscSpineRecord (class in braincell.io) at() (in module braincell.filter) AtLocation (class in braincell.filter) attach() (braincell.morph.MorphoBranch method) (braincell.Morphology method) Axon (class in braincell) B backward_euler_step() (in module braincell.quad) BasalDendrite (class in braincell) bind_synapse_input() (braincell.Cell method) braincell module braincell.channel module braincell.filter module braincell.io module braincell.ion module braincell.mech module braincell.morph module braincell.quad module braincell.synapse module braincell.vis module Branch (class in braincell) branch() (braincell.Morphology method) branch_by_order() (braincell.Morphology method) branch_class_for_type() (in module braincell.morph) branch_in() (in module braincell.filter) branch_range() (in module braincell.filter) branches (braincell.Morphology property) BranchInFilter (class in braincell.filter) BranchPoints (class in braincell.filter) BranchRangeFilter (class in braincell.filter) BranchSlice (class in braincell.filter) build_placeholder_ions() (in module braincell.ion) by_category() (braincell.quad.IntegratorRegistry method) C Ca_ZH2019_IO (class in braincell.channel) CableProperty (class in braincell) cache (braincell.io.NeuroMorphoClient property) cache_dir (braincell.io.NeuroMorphoClient property) cache_ion_total_currents() (braincell.Cell method) CaHT_HM1992 (class in braincell.channel) CaHT_Re1993 (class in braincell.channel) CaHVA_MA2020_GoC (class in braincell.channel) CaHVA_MA2020_GrC (class in braincell.channel) CaHVA_SU2015_DCN (class in braincell.channel) CaL_IS2008 (class in braincell.channel) CaL_SU2015_DCN (class in braincell.channel) Calcium (class in braincell.ion) CalciumDetailed (class in braincell.ion) CalciumFirstOrder (class in braincell.ion) CalciumFixed (class in braincell.ion) CalciumInitNernst (class in braincell.ion) CaLVA_SU2015_DCN (class in braincell.channel) CaN_IS2008 (class in braincell.channel) CaT_HM1992 (class in braincell.channel) CaT_HP1992 (class in braincell.channel) category (braincell.mech.Channel attribute) (braincell.mech.Density attribute) (braincell.mech.Ion attribute) Cav1p2_MA2020_GoC (class in braincell.channel) Cav1p2_MA2025_BC (class in braincell.channel) Cav1p3_MA2020_GoC (class in braincell.channel) Cav1p3_MA2025_BC (class in braincell.channel) Cav2p1_MA2024_PC (class in braincell.channel) Cav2p1_MA2024_PC_Frozen (class in braincell.channel) Cav2p1_MA2025_BC (class in braincell.channel) Cav2p1_RI2021_SC (class in braincell.channel) Cav2p3_MA2020_GoC (class in braincell.channel) Cav3p1_MA2020_GoC (class in braincell.channel) Cav3p1_MA2024_PC (class in braincell.channel) Cav3p1_MA2024_PC_Frozen (class in braincell.channel) Cav3p1Test_PC24 (class in braincell.channel) Cav3p2_MA2024_PC (class in braincell.channel) Cav3p2_MA2025_BC (class in braincell.channel) Cav3p2_RI2021_SC (class in braincell.channel) Cav3p3_MA2024_PC (class in braincell.channel) Cav3p3_MA2024_PC_Frozen (class in braincell.channel) Cav3p3_RI2021_SC (class in braincell.channel) CdpCAM_MA2024_PC (class in braincell.ion) CdpCR_MA2020_GrC (class in braincell.ion) CdpHVA_SU2015_DCN (class in braincell.ion) CdpLVA_SU2015_DCN (class in braincell.ion) CdpStC_CAMOnly_MA2020_GoC (class in braincell.ion) CdpStC_MA2020_GoC (class in braincell.ion) CdpStC_MA2025_BC (class in braincell.ion) CdpStC_NoCAM_MA2020_GoC (class in braincell.ion) CdpStC_RI2021_SC (class in braincell.ion) Cell (class in braincell) Channel (class in braincell) (class in braincell.mech) CheckpointError (class in braincell.io) CheckpointVersionError (class in braincell.io) children (braincell.morph.MorphoBranch property) Ci (braincell.IonInfo attribute) clear() (braincell.io.NeuroMorphoCache method) clear_ion_total_current_cache() (braincell.Cell method) cn_exp_euler_step() (in module braincell.quad) cn_rk4_step() (in module braincell.quad) Co (braincell.IonInfo attribute) coerce() (braincell.mech.Params class method) compare_morphologies() (in module braincell.vis) compare_values() (in module braincell.vis) CompositeByTypePolicy (class in braincell) compute_derivative() (braincell.Cell method) (braincell.channel.K_Leak method) (braincell.channel.LeakageChannel method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.quad.DiffEqModule method) (braincell.SingleCompartment method) (braincell.synapse.AMPA method) (braincell.synapse.GABAa method) (braincell.synapse.NMDA method) configure_defaults() (in module braincell.vis) contains() (braincell.io.NeuroMorphoCache method) current() (braincell.channel.AHP_De1994 method) (braincell.channel.Ca_ZH2019_IO method) (braincell.channel.CaHT_HM1992 method) (braincell.channel.CaHT_Re1993 method) (braincell.channel.CaHVA_MA2020_GoC method) (braincell.channel.CaHVA_MA2020_GrC method) (braincell.channel.CaHVA_SU2015_DCN method) (braincell.channel.CaL_IS2008 method) (braincell.channel.CaL_SU2015_DCN method) (braincell.channel.CaLVA_SU2015_DCN method) (braincell.channel.CaN_IS2008 method) (braincell.channel.CaT_HM1992 method) (braincell.channel.CaT_HP1992 method) (braincell.channel.Cav1p2_MA2020_GoC method) (braincell.channel.Cav1p3_MA2020_GoC method) (braincell.channel.Cav2p1_MA2024_PC_Frozen method) (braincell.channel.Cav2p1_RI2021_SC method) (braincell.channel.Cav2p3_MA2020_GoC method) (braincell.channel.Cav3p1_MA2020_GoC method) (braincell.channel.Cav3p1_MA2024_PC_Frozen method) (braincell.channel.Cav3p1Test_PC24 method) (braincell.channel.Cav3p2_RI2021_SC method) (braincell.channel.Cav3p3_MA2024_PC_Frozen method) (braincell.channel.Cav3p3_RI2021_SC method) (braincell.channel.fKdr_SU2015_DCN method) (braincell.channel.HCN1_MA2020_GoC method) (braincell.channel.HCN1_MA2024_PC method) (braincell.channel.HCN1_MA2025_BC method) (braincell.channel.HCN1_RI2021_SC method) (braincell.channel.HCN2_MA2020_GoC method) (braincell.channel.HCN_HM1992 method) (braincell.channel.HCN_SU2015_DCN method) (braincell.channel.HCN_ZH2019_IO method) (braincell.channel.IL method) (braincell.channel.K_HH1952 method) (braincell.channel.K_Kv_test method) (braincell.channel.K_Leak method) (braincell.channel.K_TM1991 method) (braincell.channel.KA1_HM1992 method) (braincell.channel.KA2_HM1992 method) (braincell.channel.Kca1p1_MA2020_GoC method) (braincell.channel.Kca2p2_MA2020_GoC method) (braincell.channel.Kca3p1_MA2020_GoC method) (braincell.channel.KDR_Ba2002 method) (braincell.channel.Kdr_ZH2019_IO method) (braincell.channel.Kir2p3_MA2020_GrC method) (braincell.channel.Kir2p3_MA2024_PC method) (braincell.channel.Kir2p3_MA2025_BC method) (braincell.channel.Kir2p3_RI2021_SC method) (braincell.channel.KK2A_HM1992 method) (braincell.channel.KK2B_HM1992 method) (braincell.channel.KM_MA2020_GoC method) (braincell.channel.KM_MA2020_GrC method) (braincell.channel.KM_RI2021_SC method) (braincell.channel.KNI_Ya1989 method) (braincell.channel.Kv1p1_MA2020_GoC method) (braincell.channel.Kv1p1_MA2020_GrC method) (braincell.channel.Kv1p1_MA2024_PC method) (braincell.channel.Kv1p1_MA2025_BC method) (braincell.channel.Kv1p1_RI2021_SC method) (braincell.channel.Kv1p5_MA2020_GrC method) (braincell.channel.Kv1p5_MA2024_PC method) (braincell.channel.Kv2p2_0010_MA2020_GrC method) (braincell.channel.Kv3p3_MA2024_PC method) (braincell.channel.Kv3p4_MA2020_GoC method) (braincell.channel.Kv3p4_MA2020_GrC method) (braincell.channel.Kv3p4_MA2024_PC method) (braincell.channel.Kv3p4_MA2025_BC method) (braincell.channel.Kv3p4_RI2021_SC method) (braincell.channel.Kv4p3_MA2020_GoC method) (braincell.channel.Kv4p3_MA2020_GrC method) (braincell.channel.Kv4p3_MA2024_PC method) (braincell.channel.Kv4p3_MA2025_BC method) (braincell.channel.Kv4p3_RI2021_SC method) (braincell.channel.LeakageChannel method) (braincell.channel.Na_Ba2002 method) (braincell.channel.Na_HH1952 method) (braincell.channel.Na_TM1991 method) (braincell.channel.Na_ZH2019_IO method) (braincell.channel.NaF_SU2015_DCN method) (braincell.channel.NaFHF_MA2020_GrC method) (braincell.channel.NaP_SU2015_DCN method) (braincell.channel.Nav1p1_MA2025_BC method) (braincell.channel.Nav1p6_MA2020_GoC method) (braincell.channel.Nav_MA2020_GrC method) (braincell.channel.SK_SU2015_DCN method) (braincell.channel.sKdr_SU2015_DCN method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.synapse.AMPA method) (braincell.synapse.GABAa method) (braincell.synapse.NMDA method) current_components() (braincell.channel.Kv1p5_MA2020_GrC method) current_owner_type (braincell.channel.AHP_De1994 attribute) (braincell.channel.Kca1p1_MA2020_GoC attribute) (braincell.channel.Kca2p2_MA2020_GoC attribute) (braincell.channel.Kca3p1_MA2020_GoC attribute) (braincell.channel.SK_SU2015_DCN attribute) CurrentClamp (class in braincell) CurrentProbe (class in braincell.mech) CustomBranch (class in braincell) CV (class in braincell) CVPerBranch (class in braincell) CVPolicy (class in braincell) CVPolicyByTypeRule (class in braincell) CVTree (class in braincell) D Dendrite (class in braincell) Density (class in braincell.mech) derivative (braincell.quad.DiffEqState property) derivative() (braincell.ion.CalciumDetailed method) (braincell.ion.CalciumFirstOrder method) (braincell.ion.CdpHVA_SU2015_DCN method) (braincell.ion.CdpLVA_SU2015_DCN method) describe() (braincell.io.NeuroMorphoClient method) diam_arc_mean (braincell.Branch property) (braincell.Morphology property) diam_mid (braincell.CV property) DiffEqModule (class in braincell.quad) DiffEqState (class in braincell.quad) diffusion (braincell.quad.DiffEqState property) DLambda (class in braincell) download() (braincell.io.NeuroMorphoClient method) E E (braincell.IonInfo attribute) edges (braincell.Morphology property) EmptyRegion (class in braincell.filter) entries() (braincell.quad.IntegratorRegistry method) entry() (braincell.quad.IntegratorRegistry method) EuclideanDistanceRegion (class in braincell.filter) euler_step() (in module braincell.quad) exp_euler_step() (in module braincell.quad) exp_exp_euler_step() (in module braincell.quad) external_currents (braincell.Ion property) F f_m_inf() (braincell.channel.Kv1p5_MA2020_GrC method) f_m_tau() (braincell.channel.Kv1p5_MA2020_GrC method) f_n_inf() (braincell.channel.Kv1p5_MA2020_GrC method) f_n_tau() (braincell.channel.Kv1p5_MA2020_GrC method) f_u_inf() (braincell.channel.Kv1p5_MA2020_GrC method) f_u_tau() (braincell.channel.Kv1p5_MA2020_GrC method) fetch_neuromorpho() (in module braincell.io) file_plan() (braincell.io.NeuroMorphoClient method) fKdr_SU2015_DCN (class in braincell.channel) from_asc() (braincell.Morphology class method) from_lengths() (braincell.Branch class method) from_neuromorpho() (braincell.Morphology class method) from_payload() (braincell.io.NeuroMorphoMeasurement class method) (braincell.io.NeuroMorphoNeuron class method) from_points() (braincell.Branch class method) from_root() (braincell.Morphology class method) from_swc() (braincell.Morphology class method) FunctionClamp (class in braincell) G GABAa (class in braincell.synapse) get() (braincell.io.NeuroMorphoMeasurement method) (braincell.mech.Params method) (braincell.quad.IntegratorRegistry method) get_cache_status() (braincell.io.NeuroMorphoClient method) get_defaults() (in module braincell.vis) get_integrator (class in braincell.quad) get_measurement() (braincell.io.NeuroMorphoClient method) get_neuron() (braincell.io.NeuroMorphoClient method) get_registry (class in braincell.quad) get_spike() (braincell.HHTypedNeuron method) get_urls() (braincell.io.NeuroMorphoClient method) H HCN1_MA2020_GoC (class in braincell.channel) HCN1_MA2024_PC (class in braincell.channel) HCN1_MA2025_BC (class in braincell.channel) HCN1_RI2021_SC (class in braincell.channel) HCN2_MA2020_GoC (class in braincell.channel) HCN_HM1992 (class in braincell.channel) HCN_SU2015_DCN (class in braincell.channel) HCN_ZH2019_IO (class in braincell.channel) heun2_step() (in module braincell.quad) heun3_step() (in module braincell.quad) HHTypedNeuron (class in braincell) I identity (braincell.mech.Density property) (braincell.mech.Synapse property) IL (class in braincell.channel) implicit_euler_step() (in module braincell.quad) implicit_exp_euler_step() (in module braincell.quad) implicit_rk4_step() (in module braincell.quad) ind_exp_euler_step() (in module braincell.quad) IndependentIntegration (class in braincell.quad) index (braincell.morph.MorphoBranch property) index_by() (braincell.morph.MorphoBranch method) init_state() (braincell.Cell method) (braincell.channel.K_Leak method) (braincell.channel.LeakageChannel method) (braincell.channel.NaFHF_MA2020_GrC method) (braincell.channel.Nav_MA2020_GrC method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.SingleCompartment method) (braincell.synapse.AMPA method) (braincell.synapse.GABAa method) (braincell.synapse.NMDA method) instance_name (braincell.mech.Density property) (braincell.mech.Synapse property) IntegratorEntry (class in braincell.quad) IntegratorRegistry (class in braincell.quad) Ion (class in braincell) (class in braincell.mech) ion_types (braincell.MixIons property) IonChannel (class in braincell) IonInfo (class in braincell) is_active() (braincell.vis.VisHooks method) items() (braincell.mech.Params method) (braincell.quad.IntegratorRegistry method) iter_search() (braincell.io.NeuroMorphoClient method) J Junction (class in braincell.mech) K K_HH1952 (class in braincell.channel) K_Kv_test (class in braincell.channel) K_Leak (class in braincell.channel) K_TM1991 (class in braincell.channel) KA1_HM1992 (class in braincell.channel) KA2_HM1992 (class in braincell.channel) Kca1p1_MA2020_GoC (class in braincell.channel) Kca1p1_MA2020_GrC (class in braincell.channel) Kca1p1_MA2024_PC (class in braincell.channel) Kca1p1_MA2025_BC (class in braincell.channel) Kca1p1_RI2021_SC (class in braincell.channel) Kca2p2_MA2020_GoC (class in braincell.channel) Kca2p2_MA2020_GrC (class in braincell.channel) Kca2p2_MA2024_PC (class in braincell.channel) Kca2p2_MA2025_BC (class in braincell.channel) Kca2p2_RI2021_SC (class in braincell.channel) Kca3p1_MA2020_GoC (class in braincell.channel) Kca3p1_MA2024_PC (class in braincell.channel) Kca3p1_MA2025_BC (class in braincell.channel) KDR_Ba2002 (class in braincell.channel) Kdr_ZH2019_IO (class in braincell.channel) keys() (braincell.mech.Params method) Kir2p3_MA2020_GrC (class in braincell.channel) Kir2p3_MA2024_PC (class in braincell.channel) Kir2p3_MA2025_BC (class in braincell.channel) Kir2p3_RI2021_SC (class in braincell.channel) KK2A_HM1992 (class in braincell.channel) KK2B_HM1992 (class in braincell.channel) KM_MA2020_GoC (class in braincell.channel) KM_MA2020_GrC (class in braincell.channel) KM_RI2021_SC (class in braincell.channel) KNI_Ya1989 (class in braincell.channel) Kv1p1_MA2020_GoC (class in braincell.channel) Kv1p1_MA2020_GrC (class in braincell.channel) Kv1p1_MA2024_PC (class in braincell.channel) Kv1p1_MA2025_BC (class in braincell.channel) Kv1p1_RI2021_SC (class in braincell.channel) Kv1p5_MA2020_GrC (class in braincell.channel) Kv1p5_MA2024_PC (class in braincell.channel) Kv2p2_0010_MA2020_GrC (class in braincell.channel) Kv3p3_MA2024_PC (class in braincell.channel) Kv3p4_MA2020_GoC (class in braincell.channel) Kv3p4_MA2020_GrC (class in braincell.channel) Kv3p4_MA2024_PC (class in braincell.channel) Kv3p4_MA2025_BC (class in braincell.channel) Kv3p4_RI2021_SC (class in braincell.channel) Kv4p3_MA2020_GoC (class in braincell.channel) Kv4p3_MA2020_GrC (class in braincell.channel) Kv4p3_MA2024_PC (class in braincell.channel) Kv4p3_MA2025_BC (class in braincell.channel) Kv4p3_RI2021_SC (class in braincell.channel) L LayoutCache (class in braincell.vis) LayoutConfig (class in braincell.vis) LeakageChannel (class in braincell.channel) length (braincell.Branch property) list_neurons() (braincell.io.NeuroMorphoCache method) load() (braincell.io.NeuroMorphoCache method) load_branch() (in module braincell.io) load_checkpoint() (braincell.Branch class method) (braincell.Morphology class method) load_morpho() (in module braincell.io) load_neuromorpho() (in module braincell.io) LocsetExpr (class in braincell.filter) LocsetMask (class in braincell.filter) LocsetSetOp (class in braincell.filter) M make_integration() (braincell.quad.IndependentIntegration method) MaxCVLen (class in braincell) mean_radius (braincell.Branch property) measurement() (braincell.io.NeuroMorphoCache method) Mechanism (class in braincell.mech) MechanismProbe (class in braincell.mech) metadata() (braincell.io.NeuroMorphoCache method) metadata_path() (braincell.io.NeuroMorphoCacheLayout method) metric (braincell.Morphology property) midpoint_step() (in module braincell.quad) mix_ions() (in module braincell) MixIons (class in braincell) module braincell braincell.channel braincell.filter braincell.io braincell.ion braincell.mech braincell.morph braincell.quad braincell.synapse braincell.vis MorphoBranch (class in braincell.morph) MorphoEdge (class in braincell.morph) Morphology (class in braincell) MorphoMetric (class in braincell.morph) N n_children (braincell.morph.MorphoBranch property) n_compartment (braincell.Cell property) (braincell.HHTypedNeuron property) (braincell.SingleCompartment property) n_segments (braincell.Branch property) Na_Ba2002 (class in braincell.channel) Na_HH1952 (class in braincell.channel) Na_TM1991 (class in braincell.channel) Na_ZH2019_IO (class in braincell.channel) NaF_SU2015_DCN (class in braincell.channel) NaFHF_MA2020_GrC (class in braincell.channel) name (braincell.Cell property) names() (braincell.quad.IntegratorRegistry method) NaP_SU2015_DCN (class in braincell.channel) Nav1p1_MA2025_BC (class in braincell.channel) Nav1p1_RI2021_SC (class in braincell.channel) Nav1p6_MA2020_GoC (class in braincell.channel) Nav1p6_MA2024_PC (class in braincell.channel) Nav1p6_MA2025_BC (class in braincell.channel) Nav1p6_RI2021_SC (class in braincell.channel) Nav_MA2020_GrC (class in braincell.channel) NeuroMlReader (class in braincell.io) NeuroMorphoCache (class in braincell.io) NeuroMorphoCacheLayout (class in braincell.io) NeuroMorphoCacheStatus (class in braincell.io) NeuroMorphoClient (class in braincell.io) NeuroMorphoDetail (class in braincell.io) NeuroMorphoDownloadItem (class in braincell.io) NeuroMorphoDownloadRecord (class in braincell.io) NeuroMorphoError (class in braincell.io) NeuroMorphoFilePlan (class in braincell.io) NeuroMorphoHTTPError (class in braincell.io) NeuroMorphoMeasurement (class in braincell.io) NeuroMorphoNeuron (class in braincell.io) NeuroMorphoNotFoundError (class in braincell.io) NeuroMorphoQuery (class in braincell.io) NeuroMorphoSearchPage (class in braincell.io) NeuroMorphoUrls (class in braincell.io) neuron_dir() (braincell.io.NeuroMorphoCacheLayout method) NMDA (class in braincell.synapse) Node (class in braincell) NodeTree (class in braincell) O original_file_path() (braincell.io.NeuroMorphoCache method) (braincell.io.NeuroMorphoCacheLayout method) original_file_url (braincell.io.NeuroMorphoDetail property) OverlaySpec (class in braincell.vis) P pack_info() (braincell.Ion method) paint() (braincell.Cell method) Params (class in braincell.mech) parent (braincell.morph.MorphoBranch property) path_length_to_root() (braincell.Morphology method) path_to_root() (braincell.Morphology method) PickInfo (class in braincell.vis) place() (braincell.Cell method) plot2d() (in module braincell.vis) plot3d() (in module braincell.vis) plot_branch_order_histogram() (in module braincell.vis) plot_dendrogram() (in module braincell.vis) plot_movie() (in module braincell.vis) plot_point_topology() (in module braincell.vis) plot_sholl() (in module braincell.vis) plot_topology() (in module braincell.vis) plot_traces() (in module braincell.vis) Point (class in braincell.mech) points (braincell.Branch property) pop_size (braincell.Cell property) (braincell.HHTypedNeuron property) (braincell.SingleCompartment property) post_integral() (braincell.Cell method) (braincell.channel.LeakageChannel method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.quad.DiffEqModule method) (braincell.SingleCompartment method) Potassium (class in braincell.ion) PotassiumFixed (class in braincell.ion) PotassiumInitNernst (class in braincell.ion) pre_integral() (braincell.Cell method) (braincell.channel.LeakageChannel method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.quad.DiffEqModule method) (braincell.SingleCompartment method) ProbeMechanism (class in braincell.mech) PUBLICATION_BRANCH_TYPE_COLORS (in module braincell.vis) PUBLICATION_RC_PARAMS (in module braincell.vis) publication_theme() (in module braincell.vis) PublicationTheme (class in braincell.vis) R radii (braincell.Branch property) RadiusRangeRegion (class in braincell.filter) ralston2_step() (in module braincell.quad) ralston3_step() (in module braincell.quad) ralston4_step() (in module braincell.quad) RandomSamples (class in braincell.filter) region (braincell.CV property) RegionAnchors (class in braincell.filter) RegionExpr (class in braincell.filter) RegionMask (class in braincell.filter) RegionSetOp (class in braincell.filter) register() (braincell.quad.IntegratorRegistry method) register_external_current() (braincell.Ion method) register_integrator (class in braincell.quad) remove() (braincell.io.NeuroMorphoCache method) reset() (braincell.Cell method) reset_defaults() (in module braincell.vis) reset_state() (braincell.Cell method) (braincell.channel.K_Leak method) (braincell.channel.Kca1p1_MA2020_GoC method) (braincell.channel.Kca2p2_MA2020_GoC method) (braincell.channel.LeakageChannel method) (braincell.channel.NaFHF_MA2020_GrC method) (braincell.channel.Nav1p1_MA2025_BC method) (braincell.channel.Nav1p1_RI2021_SC method) (braincell.channel.Nav1p6_MA2020_GoC method) (braincell.channel.Nav1p6_MA2024_PC method) (braincell.channel.Nav1p6_MA2025_BC method) (braincell.channel.Nav1p6_RI2021_SC method) (braincell.channel.Nav_MA2020_GrC method) (braincell.HHTypedNeuron method) (braincell.Ion method) (braincell.IonChannel method) (braincell.MixIons method) (braincell.SingleCompartment method) (braincell.synapse.AMPA method) (braincell.synapse.GABAa method) (braincell.synapse.NMDA method) resolve() (braincell.quad.IntegratorRegistry method) resolve_cv_bounds() (braincell.CompositeByTypePolicy method) (braincell.CVPerBranch method) (braincell.CVPolicy method) (braincell.DLambda method) (braincell.MaxCVLen method) rk2_step() (in module braincell.quad) rk3_step() (in module braincell.quad) rk4_step() (in module braincell.quad) root (braincell.Morphology property) root_type (braincell.channel.Ca_ZH2019_IO attribute) (braincell.channel.CaHT_HM1992 attribute) (braincell.channel.CaHT_Re1993 attribute) (braincell.channel.CaHVA_MA2020_GoC attribute) (braincell.channel.CaHVA_MA2020_GrC attribute) (braincell.channel.CaHVA_SU2015_DCN attribute) (braincell.channel.CaL_IS2008 attribute) (braincell.channel.CaL_SU2015_DCN attribute) (braincell.channel.CaLVA_SU2015_DCN attribute) (braincell.channel.CaN_IS2008 attribute) (braincell.channel.CaT_HM1992 attribute) (braincell.channel.CaT_HP1992 attribute) (braincell.channel.Cav1p2_MA2020_GoC attribute) (braincell.channel.Cav1p3_MA2020_GoC attribute) (braincell.channel.Cav2p1_MA2024_PC_Frozen attribute) (braincell.channel.Cav2p1_RI2021_SC attribute) (braincell.channel.Cav2p3_MA2020_GoC attribute) (braincell.channel.Cav3p1_MA2020_GoC attribute) (braincell.channel.Cav3p1_MA2024_PC_Frozen attribute) (braincell.channel.Cav3p1Test_PC24 attribute) (braincell.channel.Cav3p2_RI2021_SC attribute) (braincell.channel.Cav3p3_MA2024_PC_Frozen attribute) (braincell.channel.Cav3p3_RI2021_SC attribute) (braincell.channel.fKdr_SU2015_DCN attribute) (braincell.channel.HCN1_MA2020_GoC attribute) (braincell.channel.HCN1_MA2024_PC attribute) (braincell.channel.HCN1_MA2025_BC attribute) (braincell.channel.HCN1_RI2021_SC attribute) (braincell.channel.HCN2_MA2020_GoC attribute) (braincell.channel.HCN_HM1992 attribute) (braincell.channel.HCN_SU2015_DCN attribute) (braincell.channel.HCN_ZH2019_IO attribute) (braincell.channel.IL attribute) (braincell.channel.K_HH1952 attribute) (braincell.channel.K_Kv_test attribute) (braincell.channel.K_Leak attribute) (braincell.channel.K_TM1991 attribute) (braincell.channel.KA1_HM1992 attribute) (braincell.channel.KA2_HM1992 attribute) (braincell.channel.KDR_Ba2002 attribute) (braincell.channel.Kdr_ZH2019_IO attribute) (braincell.channel.Kir2p3_MA2020_GrC attribute) (braincell.channel.Kir2p3_MA2024_PC attribute) (braincell.channel.Kir2p3_MA2025_BC attribute) (braincell.channel.Kir2p3_RI2021_SC attribute) (braincell.channel.KK2A_HM1992 attribute) (braincell.channel.KK2B_HM1992 attribute) (braincell.channel.KM_MA2020_GoC attribute) (braincell.channel.KM_MA2020_GrC attribute) (braincell.channel.KM_RI2021_SC attribute) (braincell.channel.KNI_Ya1989 attribute) (braincell.channel.Kv1p1_MA2020_GoC attribute) (braincell.channel.Kv1p1_MA2020_GrC attribute) (braincell.channel.Kv1p1_MA2024_PC attribute) (braincell.channel.Kv1p1_MA2025_BC attribute) (braincell.channel.Kv1p1_RI2021_SC attribute) (braincell.channel.Kv1p5_MA2024_PC attribute) (braincell.channel.Kv2p2_0010_MA2020_GrC attribute) (braincell.channel.Kv3p3_MA2024_PC attribute) (braincell.channel.Kv3p4_MA2020_GoC attribute) (braincell.channel.Kv3p4_MA2020_GrC attribute) (braincell.channel.Kv3p4_MA2024_PC attribute) (braincell.channel.Kv3p4_MA2025_BC attribute) (braincell.channel.Kv3p4_RI2021_SC attribute) (braincell.channel.Kv4p3_MA2020_GoC attribute) (braincell.channel.Kv4p3_MA2020_GrC attribute) (braincell.channel.Kv4p3_MA2024_PC attribute) (braincell.channel.Kv4p3_MA2025_BC attribute) (braincell.channel.Kv4p3_RI2021_SC attribute) (braincell.channel.LeakageChannel attribute) (braincell.channel.Na_Ba2002 attribute) (braincell.channel.Na_HH1952 attribute) (braincell.channel.Na_TM1991 attribute) (braincell.channel.Na_ZH2019_IO attribute) (braincell.channel.NaF_SU2015_DCN attribute) (braincell.channel.NaFHF_MA2020_GrC attribute) (braincell.channel.NaP_SU2015_DCN attribute) (braincell.channel.Nav1p6_MA2020_GoC attribute) (braincell.channel.Nav_MA2020_GrC attribute) (braincell.channel.sKdr_SU2015_DCN attribute) (braincell.Ion attribute) (braincell.ion.Calcium attribute) (braincell.MixIons attribute) (braincell.synapse.AMPA attribute) (braincell.synapse.GABAa attribute) (braincell.synapse.NMDA attribute) RootLocation (class in braincell.filter) run() (braincell.Cell method) RunResult (class in braincell) runtime_objects() (braincell.Cell method) S save_branch() (in module braincell.io) save_checkpoint() (braincell.Branch method) (braincell.Morphology method) save_figure() (in module braincell.vis) save_morpho() (in module braincell.io) search() (braincell.io.NeuroMorphoClient method) select() (braincell.Morphology method) SelectionCache (class in braincell.filter) set_defaults() (in module braincell.vis) shortest_path_length() (braincell.Morphology method) SineClamp (class in braincell) SingleCompartment (class in braincell) SK_SU2015_DCN (class in braincell.channel) sKdr_SU2015_DCN (class in braincell.channel) Sodium (class in braincell.ion) SodiumFixed (class in braincell.ion) SodiumInitNernst (class in braincell.ion) Soma (class in braincell) source_cv_ids (braincell.Node property) splitting_step() (in module braincell.quad) ssprk3_step() (in module braincell.quad) staggered_step() (in module braincell.quad) standard_swc_path() (braincell.io.NeuroMorphoCache method) (braincell.io.NeuroMorphoCacheLayout method) standard_swc_url (braincell.io.NeuroMorphoDetail property) StateProbe (class in braincell.mech) status() (braincell.io.NeuroMorphoCache method) StepSamples (class in braincell.filter) SubtreeRegion (class in braincell.filter) suggest() (braincell.quad.IntegratorRegistry method) SwcIssue (class in braincell.io) SwcReader (class in braincell.io) SwcReadOptions (class in braincell.io) SwcReport (class in braincell.io) Synapse (class in braincell.mech) T Terminals (class in braincell.filter) theme() (in module braincell.vis) thumbnail_url (braincell.io.NeuroMorphoDetail property) to_fq() (braincell.io.NeuroMorphoQuery method) to_params() (braincell.io.NeuroMorphoQuery method) to_q() (braincell.io.NeuroMorphoQuery method) topo() (braincell.Morphology method) ToyCaBindingIcaSourceKinetic_SU2015_DCN (class in braincell.ion) ToyCaBindingKinetic_SU2015_DCN (class in braincell.ion) ToyCaBindingSourceKinetic_SU2015_DCN (class in braincell.ion) ToyCaPumpFactorKinetic_SU2015_DCN (class in braincell.ion) ToyDiamFactorKinetic_SU2015_DCN (class in braincell.ion) TreeDistanceRegion (class in braincell.filter) U UniformSamples (class in braincell.filter) unregister() (braincell.quad.IntegratorRegistry method) update() (braincell.Cell method) (braincell.SingleCompartment method) uses_total_current (braincell.ion.CalciumDetailed attribute) (braincell.ion.CalciumFirstOrder attribute) (braincell.ion.CdpHVA_SU2015_DCN attribute) (braincell.ion.CdpLVA_SU2015_DCN attribute) V valence (braincell.IonInfo attribute) values() (braincell.mech.Params method) values_spec() (braincell.vis.OverlaySpec method) ValueSpec (class in braincell.vis) varshape (braincell.Cell property) (braincell.IonChannel property) vis2d() (braincell.Branch method) (braincell.Morphology method) vis3d() (braincell.Branch method) (braincell.Morphology method) vis_branch() (braincell.Cell method) vis_cv() (braincell.Cell method) vis_node() (braincell.Cell method) vis_topology() (braincell.Cell method) VisDefaults (class in braincell.vis) VisHooks (class in braincell.vis) volume (braincell.Branch property) volumes (braincell.Branch property) W with_coverage() (braincell.mech.Density method) with_name() (braincell.mech.Density method) with_params() (braincell.mech.Density method) with_updates() (braincell.CableProperty method) (braincell.mech.Params method) without() (braincell.mech.Params method)
