dendrite_tree_3d

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dendrite_tree_3d#

class braintools.visualize.dendrite_tree_3d(segments, diameters=None, colors=None, alpha=0.8, ax=None, figsize=(12, 10), title=None, **kwargs)#

Visualize dendritic tree structure in 3D.

Parameters:

  • segments (List[Tuple[ndarray, ndarray]]) – List of (start_point, end_point) for each dendritic segment.

  • diameters (List[float] | None) – Diameter of each segment for line thickness.

  • colors (List[str] | None) – Colors for each segment.

  • alpha (float) – Line transparency.

  • ax (Axes3D | None) – 3D axes to plot on.

  • figsize (Tuple[float, float]) – Figure size if creating new figure.

  • title (str | None) – Plot title.

  • **kwargs – Additional arguments passed to plot.

Returns:

ax – The 3D axes object.

Return type:

Axes3D

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