Index _ | A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Y | Z _ __call__() (braintools.input.Input method) __init__() (braintools.init.Compose method) (braintools.input.Burst method) (braintools.input.Chirp method) (braintools.input.Clipped method) (braintools.input.Composite method) (braintools.input.Constant method) (braintools.input.ConstantValue method) (braintools.input.DoubleExponential method) (braintools.input.ExponentialDecay method) (braintools.input.GaussianPulse method) (braintools.input.Input method) (braintools.input.NoisySinusoidal method) (braintools.input.OUProcess method) (braintools.input.Poisson method) (braintools.input.Ramp method) (braintools.input.Repeated method) (braintools.input.Sawtooth method) (braintools.input.Section method) (braintools.input.Sequential method) (braintools.input.Sinusoidal method) (braintools.input.Smoothed method) (braintools.input.Spike method) (braintools.input.Square method) (braintools.input.Step method) (braintools.input.TimeShifted method) (braintools.input.Transformed method) (braintools.input.Triangular method) (braintools.input.WienerProcess method) A absolute_error (class in braintools.metric) AdaBelief (class in braintools.optim) Adadelta (class in braintools.optim) Adafactor (class in braintools.optim) Adagrad (class in braintools.optim) Adam (class in braintools.optim) Adamax (class in braintools.optim) AdamW (class in braintools.optim) add() (braintools.init.Initialization method) (in module braintools.tree) add_param_group() (braintools.optim.OptaxOptimizer method), [1] add_scheduler() (braintools.optim.OptaxOptimizer method) AllToAll (class in braintools.conn) AllToAllCompartments (class in braintools.conn) amplitude (braintools.input.Chirp attribute) (braintools.input.DoubleExponential attribute) (braintools.input.ExponentialDecay attribute) (braintools.input.GaussianPulse attribute) (braintools.input.NoisySinusoidal attribute) (braintools.input.Poisson attribute) (braintools.input.Sawtooth attribute) (braintools.input.Sinusoidal attribute) (braintools.input.Square attribute) (braintools.input.Triangular attribute) amplitudes (braintools.input.Step attribute) animate_1D (class in braintools.visualize) animate_2D (class in braintools.visualize) AntiReach (class in braintools.cogtask) APICAL_DENDRITE (in module braintools.conn) ApicalDendriteTargeting (class in braintools.conn) apply() (braintools.init.DistanceProfile method) (braintools.init.Initialization method) (braintools.input.Input method) (braintools.optim.LRScheduler method) apply_style (class in braintools.visualize) ApplyProfile (class in braintools.init) Arctan (class in braintools.surrogate) arctan() (in module braintools.surrogate) as_feature() (in module braintools.cogtask) as_numpy() (in module braintools.tree) AsyncManager (class in braintools.file) attach_optimizer() (braintools.optim.ChainedScheduler method) (braintools.optim.LRScheduler method) AXON (in module braintools.conn) AxonalArborization (class in braintools.conn) AxonalBranching (class in braintools.conn) AxonalProjection (class in braintools.conn) AxonToDendrite (class in braintools.conn) AxonToSoma (class in braintools.conn) B BASAL_DENDRITE (in module braintools.conn) BasalDendriteTargeting (class in braintools.conn) base_lr (braintools.optim.OptaxOptimizer attribute) (braintools.optim.OptaxOptimizer property) batch_sample() (braintools.cogtask.Task method) BernoulliEncoder (class in braintools) Beta (class in braintools.init) bias (braintools.input.Chirp attribute) (braintools.input.Sawtooth attribute) (braintools.input.Sinusoidal attribute) (braintools.input.Square attribute) (braintools.input.Triangular attribute) BimodalProfile (class in braintools.init) Blank (class in braintools.cogtask) box_plot (class in braintools.visualize) brain_colormaps (class in braintools.visualize) brain_surface_3d (class in braintools.visualize) braintools module braintools.cogtask module braintools.conn module braintools.file module braintools.init module braintools.input module braintools.metric module braintools.optim module braintools.quad module braintools.surrogate module braintools.tree module braintools.visualize module BranchSpecific (class in braintools.conn) Burst (class in braintools.input) burst() (in module braintools.input) burst_amp (braintools.input.Burst attribute) burst_duration (braintools.input.Burst attribute) burst_freq (braintools.input.Burst attribute) burst_synchrony_index (class in braintools.metric) C c_end (braintools.input.Ramp attribute) c_start (braintools.input.Ramp attribute) candidates (braintools.optim.NevergradOptimizer attribute) center (braintools.input.GaussianPulse attribute) ChainedScheduler (class in braintools.optim) children() (braintools.cogtask.If method) (braintools.cogtask.Parallel method) (braintools.cogtask.Phase method) (braintools.cogtask.Repeat method) (braintools.cogtask.Sequence method) (braintools.cogtask.Switch method) (braintools.cogtask.While method) Chirp (class in braintools.input) chirp() (in module braintools.input) CircleFeature (class in braintools.cogtask) circular() (in module braintools.cogtask) clear() (braintools.cogtask.Context method) (braintools.optim.UniqueStateManager method) clip() (braintools.init.DistanceProfile method) (braintools.init.Initialization method) (braintools.input.Input method) Clipped (class in braintools.init) (class in braintools.input) ClipProfile (class in braintools.init) close() (braintools.file.AsyncManager method) ClusteredRandom (class in braintools.conn) coherence_analysis (class in braintools.metric) colorblind_friendly_style (class in braintools.visualize) Comparison (class in braintools.cogtask) comparison_label() (in module braintools.cogtask) CompartmentSpecific (class in braintools.conn) Compose (class in braintools.init) ComposedProfile (class in braintools.init) Composite (class in braintools.input) CompositeConnectivity (class in braintools.conn) concat() (in module braintools.cogtask) (in module braintools.tree) Conditional (class in braintools.init) confusion_matrix (class in braintools.visualize) ConnectionResult (class in braintools.conn) Connectivity (class in braintools.conn) connectivity_3d (class in braintools.visualize) connectivity_matrix (class in braintools.visualize) Constant (class in braintools.init) (class in braintools.input) constant() (in module braintools.input) ConstantLR (class in braintools.optim) ConstantValue (class in braintools.input) Context (class in braintools.cogtask) ContextDecisionMaking (class in braintools.cogtask) Conv2dKernel (class in braintools.conn) convex_kl_divergence (class in braintools.metric) copy() (braintools.cogtask.Feature method) (braintools.cogtask.FeatureSet method) CorePeripheryRandom (class in braintools.conn) correlation_index (class in braintools.metric) correlation_matrix (class in braintools.visualize) cos_sin() (in module braintools.cogtask) cosine_distance (class in braintools.metric) cosine_similarity (class in braintools.metric) CosineAnnealingLR (class in braintools.optim) CosineAnnealingWarmRestarts (class in braintools.optim) create_neural_colormap (class in braintools.visualize) cross_correlation (class in braintools.metric) ctc_loss (class in braintools.metric) ctc_loss_with_forward_probs (class in braintools.metric) ctx_value() (in module braintools.cogtask) Cue (class in braintools.cogtask) current_lr (braintools.optim.OptaxOptimizer property) current_source_density (class in braintools.metric) CustomCompartment (class in braintools.conn) CustomKernel (class in braintools.conn) CyclicLR (class in braintools.optim) D dark_style (class in braintools.visualize) dashboard_neural_activity (class in braintools.visualize) DeclarativePhase (class in braintools.cogtask) default_tx() (braintools.optim.AdaBelief method) (braintools.optim.Adadelta method) (braintools.optim.Adafactor method) (braintools.optim.Adagrad method) (braintools.optim.Adam method) (braintools.optim.Adamax method) (braintools.optim.AdamW method) (braintools.optim.Fromage method) (braintools.optim.Lamb method) (braintools.optim.Lars method) (braintools.optim.LBFGS method) (braintools.optim.Lion method) (braintools.optim.Lookahead method) (braintools.optim.Momentum method) (braintools.optim.MomentumNesterov method) (braintools.optim.Nadam method) (braintools.optim.Novograd method) (braintools.optim.OptaxOptimizer method) (braintools.optim.RAdam method) (braintools.optim.RMSprop method) (braintools.optim.Rprop method) (braintools.optim.SGD method) (braintools.optim.SM3 method) (braintools.optim.Yogi method) define_features() (braintools.cogtask.AntiReach method) (braintools.cogtask.ContextDecisionMaking method) (braintools.cogtask.DelayComparison method) (braintools.cogtask.DelayDirectionClassification method) (braintools.cogtask.DelayDirectionReproduction method) (braintools.cogtask.DelayMatchCategory method) (braintools.cogtask.DelayMatchSample method) (braintools.cogtask.DelayPairedAssociation method) (braintools.cogtask.DualDelayMatchSample method) (braintools.cogtask.EvidenceAccumulation method) (braintools.cogtask.GoNoGo method) (braintools.cogtask.HierarchicalReasoning method) (braintools.cogtask.ImmediateDirectionClassification method) (braintools.cogtask.ImmediateDirectionReproduction method) (braintools.cogtask.IntervalDiscrimination method) (braintools.cogtask.PerceptualDecisionMaking method) (braintools.cogtask.PerceptualDecisionMakingDelayResponse method) (braintools.cogtask.PostDecisionWager method) (braintools.cogtask.ProbabilisticReasoning method) (braintools.cogtask.PulseDecisionMaking method) (braintools.cogtask.Reaching1D method) (braintools.cogtask.ReadySetGo method) (braintools.cogtask.SingleContextDecisionMaking method) (braintools.cogtask.Task method) define_phases() (braintools.cogtask.AntiReach method) (braintools.cogtask.ContextDecisionMaking method) (braintools.cogtask.DelayComparison method) (braintools.cogtask.DelayDirectionClassification method) (braintools.cogtask.DelayDirectionReproduction method) (braintools.cogtask.DelayMatchCategory method) (braintools.cogtask.DelayMatchSample method) (braintools.cogtask.DelayPairedAssociation method) (braintools.cogtask.DualDelayMatchSample method) (braintools.cogtask.EvidenceAccumulation method) (braintools.cogtask.GoNoGo method) (braintools.cogtask.HierarchicalReasoning method) (braintools.cogtask.ImmediateDirectionClassification method) (braintools.cogtask.ImmediateDirectionReproduction method) (braintools.cogtask.IntervalDiscrimination method) (braintools.cogtask.PerceptualDecisionMaking method) (braintools.cogtask.PerceptualDecisionMakingDelayResponse method) (braintools.cogtask.PostDecisionWager method) (braintools.cogtask.ProbabilisticReasoning method) (braintools.cogtask.PulseDecisionMaking method) (braintools.cogtask.Reaching1D method) (braintools.cogtask.ReadySetGo method) (braintools.cogtask.SingleContextDecisionMaking method) (braintools.cogtask.Task method) Delay (class in braintools.cogtask) delay2csr() (braintools.conn.ConnectionResult method) delay2matrix() (braintools.conn.ConnectionResult method) delay_scale() (braintools.conn.Connectivity method) DelayComparison (class in braintools.cogtask) DelayDirectionClassification (class in braintools.cogtask) DelayDirectionReproduction (class in braintools.cogtask) DelayMatchCategory (class in braintools.cogtask) DelayMatchSample (class in braintools.cogtask) DelayPairedAssociation (class in braintools.cogtask) DeltaEncoder (class in braintools) DeltaOrthogonal (class in braintools.init) dendrite_tree_3d (class in braintools.visualize) DendriteToDendrite (class in braintools.conn) DendriteToSoma (class in braintools.conn) DendriticIntegration (class in braintools.conn) DendriticTree (class in braintools.conn) describe() (braintools.cogtask.DeclarativePhase method) DistalTargeting (class in braintools.conn) DistanceDependent (class in braintools.conn) DistanceModulated (class in braintools.init) DistanceProfile (class in braintools.init) distribution_plot (class in braintools.visualize) DoGKernel (class in braintools.conn) DoGProfile (class in braintools.init) dot() (in module braintools.tree) double_exponential() (in module braintools.input) DoubleExponential (class in braintools.input) dt (braintools.cogtask.Context property) (braintools.input.Input attribute) DualDelayMatchSample (class in braintools.cogtask) duration (braintools.input.Burst attribute) (braintools.input.Constant attribute) (braintools.input.DoubleExponential attribute) (braintools.input.ExponentialDecay attribute) (braintools.input.GaussianPulse attribute) (braintools.input.Input attribute) (braintools.input.Ramp attribute) (braintools.input.Section attribute) (braintools.input.Spike attribute) (braintools.input.Step attribute) durations (braintools.input.Section attribute) duty_cycle (braintools.input.Square attribute) E electrode_array_3d (class in braintools.visualize) encode_inputs() (braintools.cogtask.DeclarativePhase method) (braintools.cogtask.If method) (braintools.cogtask.Parallel method) (braintools.cogtask.Phase method) (braintools.cogtask.Repeat method) (braintools.cogtask.Sequence method) (braintools.cogtask.Switch method) (braintools.cogtask.While method) encode_outputs() (braintools.cogtask.DeclarativePhase method) (braintools.cogtask.If method) (braintools.cogtask.Parallel method) (braintools.cogtask.Phase method) (braintools.cogtask.Repeat method) (braintools.cogtask.Sequence method) (braintools.cogtask.Switch method) (braintools.cogtask.While method) ERF (class in braintools.surrogate) erf() (in module braintools.surrogate) errors (braintools.optim.NevergradOptimizer attribute) EvidenceAccumulation (class in braintools.cogtask) ExcitatoryInhibitory (class in braintools.conn) execute() (braintools.cogtask.If method) (braintools.cogtask.Parallel method) (braintools.cogtask.Repeat method) (braintools.cogtask.Sequence method) (braintools.cogtask.Switch method) (braintools.cogtask.While method) execute_packed() (braintools.cogtask.If method) (braintools.cogtask.Parallel method) (braintools.cogtask.Switch method) (braintools.cogtask.While method) execute_phase() (in module braintools.cogtask) execute_phase_packed() (in module braintools.cogtask) expand() (in module braintools.tree) Exponential (class in braintools.conn) (class in braintools.init) exponential_decay() (in module braintools.input) ExponentialDecay (class in braintools.input) ExponentialDecayLR (class in braintools.optim) ExponentialLR (class in braintools.optim) ExponentialProfile (class in braintools.init) F f_end (braintools.input.Chirp attribute) f_start (braintools.input.Chirp attribute) Feature (class in braintools.cogtask) FeatureSet (class in braintools.cogtask) firing_rate (class in braintools.metric) firing_rate() (in module braintools.cogtask) firing_rate_map (class in braintools.visualize) Fixation (class in braintools.cogtask) FixedProb (class in braintools.conn) frequency (braintools.input.NoisySinusoidal attribute) (braintools.input.Sawtooth attribute) (braintools.input.Sinusoidal attribute) (braintools.input.Square attribute) (braintools.input.Triangular attribute) Fromage (class in braintools.optim) functional_connectivity (class in braintools.metric) functional_connectivity_dynamics (class in braintools.metric) G GaborKernel (class in braintools.conn) Gamma (class in braintools.init) Gaussian (class in braintools.conn) gaussian() (in module braintools.cogtask) gaussian_grad() (in module braintools.surrogate) gaussian_pulse() (in module braintools.input) GaussianGrad (class in braintools.surrogate) GaussianKernel (class in braintools.conn) GaussianProfile (class in braintools.init) GaussianPulse (class in braintools.input) generate() (braintools.conn.AllToAll method) (braintools.conn.AxonalArborization method) (braintools.conn.AxonalBranching method) (braintools.conn.AxonalProjection method) (braintools.conn.BranchSpecific method) (braintools.conn.ClusteredRandom method) (braintools.conn.CompartmentSpecific method) (braintools.conn.CompositeConnectivity method) (braintools.conn.Connectivity method) (braintools.conn.Conv2dKernel method) (braintools.conn.CorePeripheryRandom method) (braintools.conn.CustomCompartment method) (braintools.conn.CustomKernel method) (braintools.conn.DendriticIntegration method) (braintools.conn.DendriticTree method) (braintools.conn.DistanceDependent method) (braintools.conn.DoGKernel method) (braintools.conn.ExcitatoryInhibitory method) (braintools.conn.GaborKernel method) (braintools.conn.GaussianKernel method) (braintools.conn.Grid2d method) (braintools.conn.HierarchicalRandom method) (braintools.conn.LaplacianKernel method) (braintools.conn.ModularGeneral method) (braintools.conn.ModularRandom method) (braintools.conn.MorphologyDistance method) (braintools.conn.MultiCompartmentConnectivity method) (braintools.conn.OneToOne method) (braintools.conn.PointConnectivity method) (braintools.conn.RadialPatches method) (braintools.conn.Random method) (braintools.conn.Regular method) (braintools.conn.Ring method) (braintools.conn.ScaledConnectivity method) (braintools.conn.ScaleFree method) (braintools.conn.SmallWorld method) (braintools.conn.SobelKernel method) (braintools.conn.SynapticClustering method) (braintools.conn.SynapticPlacement method) (braintools.conn.TopographicProjection method) get() (braintools.cogtask.Context method) get_color_palette (class in braintools.visualize) get_distances() (braintools.conn.ConnectionResult method) get_duration() (braintools.cogtask.If method) (braintools.cogtask.Parallel method) (braintools.cogtask.Phase method) (braintools.cogtask.Repeat method) (braintools.cogtask.Sequence method) (braintools.cogtask.Switch method) (braintools.cogtask.VariableDuration method) (braintools.cogtask.While method) get_figure (class in braintools.visualize) get_flattened() (braintools.optim.UniqueStateManager method) get_last_lr() (braintools.optim.OptaxOptimizer method) get_lr() (braintools.optim.ChainedScheduler method) (braintools.optim.ConstantLR method) (braintools.optim.CosineAnnealingLR method) (braintools.optim.CosineAnnealingWarmRestarts method) (braintools.optim.CyclicLR method) (braintools.optim.ExponentialDecayLR method) (braintools.optim.ExponentialLR method) (braintools.optim.LinearLR method) (braintools.optim.LRScheduler method) (braintools.optim.MultiStepLR method) (braintools.optim.OneCycleLR method) (braintools.optim.PiecewiseConstantSchedule method) (braintools.optim.PolynomialLR method) (braintools.optim.ReduceLROnPlateau method) (braintools.optim.SequentialLR method) (braintools.optim.StepLR method) (braintools.optim.WarmupCosineSchedule method) (braintools.optim.WarmupScheduler method) get_state_by_path() (braintools.optim.UniqueStateManager method) GoNoGo (class in braintools.cogtask) Grid2d (class in braintools.conn) H HierarchicalRandom (class in braintools.conn) HierarchicalReasoning (class in braintools.cogtask) hinge_loss (class in braintools.metric) huber_loss (class in braintools.metric) I I_and_duration (braintools.input.Constant attribute) Identity (class in braintools.init) identity() (in module braintools.cogtask) idx() (in module braintools.tree) If (class in braintools.cogtask) imex_ars222_step (class in braintools.quad) imex_cnab_step (class in braintools.quad) imex_euler_step (class in braintools.quad) ImmediateDirectionClassification (class in braintools.cogtask) ImmediateDirectionReproduction (class in braintools.cogtask) Initialization (class in braintools.init) initialize() (in module braintools.cogtask) initialize2() (in module braintools.cogtask) Input (class in braintools.input) inter_burst_interval (braintools.input.Burst attribute) interactive_3d_scatter (class in braintools.visualize) interactive_heatmap (class in braintools.visualize) interactive_line_plot (class in braintools.visualize) interactive_network (class in braintools.visualize) interactive_spike_raster (class in braintools.visualize) interval_of() (in module braintools.cogtask) IntervalDiscrimination (class in braintools.cogtask) inv_square_grad() (in module braintools.surrogate) InvSquareGrad (class in braintools.surrogate) is_feature() (in module braintools.cogtask) is_variable_length (braintools.cogtask.Task property) isi_distribution (class in braintools.visualize) K KaimingNormal (class in braintools.init) KaimingUniform (class in braintools.init) kl_divergence (class in braintools.metric) kl_divergence_with_log_targets (class in braintools.metric) L l1_loss (class in braintools.metric) l2_loss (class in braintools.metric) l2_norm (class in braintools.metric) label() (in module braintools.cogtask) Lamb (class in braintools.optim) LaplacianKernel (class in braintools.conn) Lars (class in braintools.optim) LatencyEncoder (class in braintools) LBFGS (class in braintools.optim) leaky_relu() (in module braintools.surrogate) LeakyRelu (class in braintools.surrogate) learning_curve (class in braintools.visualize) LecunNormal (class in braintools.init) LecunUniform (class in braintools.init) lfp_phase_coherence (class in braintools.metric) line_plot (class in braintools.visualize) LinearLR (class in braintools.optim) LinearProfile (class in braintools.init) Lion (class in braintools.optim) load_matfile (class in braintools.file) load_state_dict() (braintools.optim.ChainedScheduler method) (braintools.optim.LRScheduler method) (braintools.optim.OptaxOptimizer method), [1] (braintools.optim.SequentialLR method) log_cosh (class in braintools.metric) log_tailed_relu() (in module braintools.surrogate) LogisticProfile (class in braintools.init) LogNormal (class in braintools.init) LogTailedRelu (class in braintools.surrogate) Lookahead (class in braintools.optim) lr (braintools.optim.OptaxOptimizer attribute) lr_apply() (braintools.optim.OptaxOptimizer method) LRScheduler (class in braintools.optim) M make_fenchel_young_loss (class in braintools.metric) make_unique() (braintools.optim.UniqueStateManager method) Match (class in braintools.cogtask) match_label() (in module braintools.cogtask) matrix_correlation (class in braintools.metric) max_steps() (braintools.cogtask.If method) (braintools.cogtask.Parallel method) (braintools.cogtask.Phase method) (braintools.cogtask.Repeat method) (braintools.cogtask.Sequence method) (braintools.cogtask.Switch method) (braintools.cogtask.VariableDuration method) (braintools.cogtask.While method) max_trial_duration() (braintools.cogtask.Task method) max_value() (braintools.cogtask.TruncExp method) (braintools.cogtask.UniformDuration method) mean (braintools.input.OUProcess attribute) merge_with() (braintools.optim.UniqueStateManager method) method (braintools.input.Chirp attribute) MexicanHat (class in braintools.conn) MexicanHatProfile (class in braintools.init) min_value() (braintools.cogtask.TruncExp method) (braintools.cogtask.UniformDuration method) Mixture (class in braintools.init) ModularGeneral (class in braintools.conn) ModularRandom (class in braintools.conn) module braintools braintools.cogtask braintools.conn braintools.file braintools.init braintools.input braintools.metric braintools.optim braintools.quad braintools.surrogate braintools.tree braintools.visualize Momentum (class in braintools.optim) MomentumNesterov (class in braintools.optim) MorphologyDistance (class in braintools.conn) msgpack_from_state_dict (class in braintools.file) msgpack_load (class in braintools.file) msgpack_register_serialization (class in braintools.file) msgpack_save (class in braintools.file) msgpack_to_state_dict (class in braintools.file) mul() (in module braintools.tree) multi_gaussian_grad() (in module braintools.surrogate) multiclass_hinge_loss (class in braintools.metric) multiclass_perceptron_loss (class in braintools.metric) MultiCompartmentConnectivity (class in braintools.conn) MultiGaussianGrad (class in braintools.surrogate) multiply() (braintools.init.Initialization method) MultiStepLR (class in braintools.optim) N n (braintools.input.OUProcess attribute) (braintools.input.Poisson attribute) (braintools.input.WienerProcess attribute) n_bursts (braintools.input.Burst attribute) n_connections (braintools.conn.ConnectionResult property) n_steps (braintools.input.Input attribute) Nadam (class in braintools.optim) network_topology (class in braintools.visualize) neural_network_3d (class in braintools.visualize) neural_style (class in braintools.visualize) neural_trajectory (class in braintools.visualize) NevergradOptimizer (class in braintools.optim) nll_loss (class in braintools.metric) noise_amplitude (braintools.input.NoisySinusoidal attribute) noisy_sinusoidal() (in module braintools.input) NoisySinusoidal (class in braintools.input) nonzero_sign_log() (in module braintools.surrogate) NonzeroSignLog (class in braintools.surrogate) Normal (class in braintools.init) Novograd (class in braintools.optim) num_unique_states (braintools.optim.UniqueStateManager property) O ode_bs32_step (class in braintools.quad) ode_dopri5_step (class in braintools.quad) ode_dopri8_step (class in braintools.quad) ode_euler_step (class in braintools.quad) ode_expeuler_step (class in braintools.quad) ode_heun_step (class in braintools.quad) ode_midpoint_step (class in braintools.quad) ode_ralston2_step (class in braintools.quad) ode_ralston3_step (class in braintools.quad) ode_rk23_step (class in braintools.quad) ode_rk2_step (class in braintools.quad) ode_rk3_step (class in braintools.quad) ode_rk45_dopri_step (in module braintools.quad) ode_rk45_step (class in braintools.quad) ode_rk4_38_step (class in braintools.quad) ode_rk4_step (class in braintools.quad) ode_rk87_dopri_step (in module braintools.quad) ode_rkf45_step (class in braintools.quad) ode_ssprk33_step (class in braintools.quad) on_enter() (braintools.cogtask.DeclarativePhase method) (braintools.cogtask.Phase method) on_exit() (braintools.cogtask.DeclarativePhase method) (braintools.cogtask.Phase method) one_hot() (in module braintools.cogtask) OneCycleLR (class in braintools.optim) OneToOne (class in braintools.conn) opt_state (braintools.optim.OptaxOptimizer attribute) OptaxOptimizer (class in braintools.optim) Optimizer (class in braintools.optim) Orthogonal (class in braintools.init) ou_process() (in module braintools.input) OUProcess (class in braintools.input) P Parallel (class in braintools.cogtask) param() (in module braintools.init) param_groups (braintools.optim.OptaxOptimizer attribute) param_states (braintools.optim.OptaxOptimizer attribute) perceptron_loss (class in braintools.metric) PerceptualDecisionMaking (class in braintools.cogtask) PerceptualDecisionMakingDelayResponse (class in braintools.cogtask) period_to_arr() (in module braintools.cogtask) Phase (class in braintools.cogtask) phase_amplitude_coupling (class in braintools.metric) phase_duration (braintools.cogtask.Context property) phase_locking_value (class in braintools.metric) phase_portrait (class in braintools.visualize) phase_slice() (braintools.cogtask.Context method) phase_space_3d (class in braintools.visualize) phase_time (braintools.cogtask.Context property) phase_tree_is_variable() (in module braintools.cogtask) piecewise_exp() (in module braintools.surrogate) piecewise_leaky_relu() (in module braintools.surrogate) piecewise_quadratic() (in module braintools.surrogate) PiecewiseConstantSchedule (class in braintools.optim) PiecewiseExp (class in braintools.surrogate) PiecewiseLeakyRelu (class in braintools.surrogate) PiecewiseQuadratic (class in braintools.surrogate) PipeProfile (class in braintools.init) PointConnectivity (class in braintools.conn) Poisson (class in braintools.input) poisson() (in module braintools.input) PoissonEncoder (class in braintools) poly_loss_cross_entropy (class in braintools.metric) PolynomialLR (class in braintools.optim) population_activity (class in braintools.visualize) PopulationEncoder (class in braintools) positions (braintools.conn.ConnectionResult property) PostDecisionWager (class in braintools.cogtask) power_spectral_density (class in braintools.metric) PowerLawProfile (class in braintools.init) precision_recall_curve (class in braintools.visualize) ProbabilisticReasoning (class in braintools.cogtask) probability() (braintools.init.ApplyProfile method) (braintools.init.BimodalProfile method) (braintools.init.ClipProfile method) (braintools.init.ComposedProfile method) (braintools.init.DistanceProfile method) (braintools.init.DoGProfile method) (braintools.init.ExponentialProfile method) (braintools.init.GaussianProfile method) (braintools.init.LinearProfile method) (braintools.init.LogisticProfile method) (braintools.init.MexicanHatProfile method) (braintools.init.PipeProfile method) (braintools.init.PowerLawProfile method) (braintools.init.SigmoidProfile method) (braintools.init.StepProfile method) ProximalTargeting (class in braintools.conn) publication_style (class in braintools.visualize) PulseDecisionMaking (class in braintools.cogtask) Q q_pseudo_spike() (in module braintools.surrogate) QPseudoSpike (class in braintools.surrogate) qq_plot (class in braintools.visualize) R RAdam (class in braintools.optim) RadialPatches (class in braintools.conn) Ramp (class in braintools.input) ramp() (in module braintools.input) Random (class in braintools.conn) ranking_softmax_loss (class in braintools.metric) RankOrderEncoder (class in braintools) raster_plot (class in braintools.metric) (class in braintools.visualize) rate (braintools.input.Poisson attribute) RateEncoder (class in braintools) Reaching1D (class in braintools.cogtask) ReadySetGo (class in braintools.cogtask) Recall (class in braintools.cogtask) ReduceLROnPlateau (class in braintools.optim) register_trainable_weights() (braintools.optim.OptaxOptimizer method), [1] (braintools.optim.Optimizer method) regression_plot (class in braintools.visualize) Regular (class in braintools.conn) relu_grad() (in module braintools.surrogate) ReluGrad (class in braintools.surrogate) remove_axis (class in braintools.visualize) Repeat (class in braintools.cogtask) repeat() (braintools.input.Input method) Repeated (class in braintools.input) residual_plot (class in braintools.visualize) Response (class in braintools.cogtask) Ring (class in braintools.conn) RMSprop (class in braintools.optim) roc_curve (class in braintools.visualize) Rprop (class in braintools.optim) S S2NN (class in braintools.surrogate) s2nn() (in module braintools.surrogate) Sample (class in braintools.cogtask) sample_trial() (braintools.cogtask.Task method) save_async() (braintools.file.AsyncManager method) Sawtooth (class in braintools.input) sawtooth() (in module braintools.input) scalar() (in module braintools.cogtask) scale() (braintools.input.Input method) (in module braintools.tree) Scaled (class in braintools.init) ScaledConnectivity (class in braintools.conn) ScaleFree (class in braintools.conn) scatter_matrix (class in braintools.visualize) ScipyOptimizer (class in braintools.optim) sde_euler_step (class in braintools.quad) sde_expeuler_step (class in braintools.quad) sde_heun_step (class in braintools.quad) sde_implicit_euler_step (class in braintools.quad) sde_milstein_step (class in braintools.quad) sde_srk2_step (class in braintools.quad) sde_srk3_step (class in braintools.quad) sde_srk4_step (class in braintools.quad) sde_tamed_euler_step (class in braintools.quad) Section (class in braintools.input) section() (in module braintools.input) seed (braintools.input.NoisySinusoidal attribute) (braintools.input.OUProcess attribute) (braintools.input.Poisson attribute) (braintools.input.WienerProcess attribute) Sequence (class in braintools.cogtask) Sequential (class in braintools.input) SequentialLR (class in braintools.optim) set_default_colors (class in braintools.visualize) SGD (class in braintools.optim) shape (braintools.conn.ConnectionResult property) (braintools.input.Input attribute) shift() (braintools.cogtask.Feature method) (braintools.cogtask.FeatureSet method) (braintools.input.Input method) (in module braintools.tree) sigma (braintools.input.GaussianPulse attribute) (braintools.input.OUProcess attribute) (braintools.input.WienerProcess attribute) Sigmoid (class in braintools.surrogate) sigmoid() (in module braintools.surrogate) sigmoid_binary_cross_entropy (class in braintools.metric) sigmoid_focal_loss (class in braintools.metric) SigmoidProfile (class in braintools.init) SingleContextDecisionMaking (class in braintools.cogtask) Sinusoidal (class in braintools.input) sinusoidal() (in module braintools.input) slayer_grad() (in module braintools.surrogate) SlayerGrad (class in braintools.surrogate) SM3 (class in braintools.optim) SmallWorld (class in braintools.conn) smooth() (braintools.input.Input method) smooth_labels (class in braintools.metric) Smoothed (class in braintools.input) SobelKernel (class in braintools.conn) soft_sign() (in module braintools.surrogate) softmax_cross_entropy (class in braintools.metric) softmax_cross_entropy_with_integer_labels (class in braintools.metric) SoftSign (class in braintools.surrogate) SOMA (in module braintools.conn) SomaToDendrite (class in braintools.conn) sp_lens (braintools.input.Spike attribute) sp_sizes (braintools.input.Spike attribute) sp_times (braintools.input.Spike attribute) spectral_entropy (class in braintools.metric) Spike (class in braintools.input) spike() (in module braintools.input) spike_bitwise (class in braintools) spike_bitwise_and (class in braintools) spike_bitwise_iand (class in braintools) spike_bitwise_ixor (class in braintools) spike_bitwise_not (class in braintools) spike_bitwise_or (class in braintools) spike_bitwise_xor (class in braintools) spike_histogram (class in braintools.visualize) spike_raster (class in braintools.visualize) spike_time_tiling_coefficient (class in braintools.metric) spike_train_synchrony (class in braintools.metric) SpikeCountEncoder (class in braintools) split() (in module braintools.tree) Square (class in braintools.input) square() (in module braintools.input) squared_error (class in braintools.metric) squared_norm() (in module braintools.tree) squarewave_fourier_series() (in module braintools.surrogate) SquarewaveFourierSeries (class in braintools.surrogate) state (braintools.cogtask.Context property) state_dict() (braintools.optim.ChainedScheduler method) (braintools.optim.LRScheduler method) (braintools.optim.OptaxOptimizer method), [1] (braintools.optim.SequentialLR method) Step (class in braintools.input) step() (braintools.optim.ChainedScheduler method) (braintools.optim.CosineAnnealingWarmRestarts method) (braintools.optim.LRScheduler method) (braintools.optim.OptaxOptimizer method), [1] (braintools.optim.ReduceLROnPlateau method) (braintools.optim.SequentialLR method) (in module braintools.input) step_count (braintools.optim.OptaxOptimizer attribute) step_count() (braintools.cogtask.If method) (braintools.cogtask.Parallel method) (braintools.cogtask.Phase method) (braintools.cogtask.Repeat method) (braintools.cogtask.Sequence method) (braintools.cogtask.Switch method) (braintools.cogtask.VariableDuration method) (braintools.cogtask.While method) step_epoch() (braintools.optim.LRScheduler method) step_times (braintools.input.Step attribute) StepCurrentEncoder (class in braintools) StepLR (class in braintools.optim) StepProfile (class in braintools.init) Stimulus (class in braintools.cogtask) sub() (in module braintools.tree) sum() (in module braintools.tree) surrogate_fun() (braintools.surrogate.Arctan method) (braintools.surrogate.ERF method) (braintools.surrogate.LeakyRelu method) (braintools.surrogate.LogTailedRelu method) (braintools.surrogate.NonzeroSignLog method) (braintools.surrogate.PiecewiseExp method) (braintools.surrogate.PiecewiseLeakyRelu method) (braintools.surrogate.PiecewiseQuadratic method) (braintools.surrogate.QPseudoSpike method) (braintools.surrogate.S2NN method) (braintools.surrogate.Sigmoid method) (braintools.surrogate.SoftSign method) (braintools.surrogate.SquarewaveFourierSeries method) surrogate_grad() (braintools.surrogate.Arctan method) (braintools.surrogate.ERF method) (braintools.surrogate.GaussianGrad method) (braintools.surrogate.InvSquareGrad method) (braintools.surrogate.LeakyRelu method) (braintools.surrogate.LogTailedRelu method) (braintools.surrogate.MultiGaussianGrad method) (braintools.surrogate.NonzeroSignLog method) (braintools.surrogate.PiecewiseExp method) (braintools.surrogate.PiecewiseLeakyRelu method) (braintools.surrogate.PiecewiseQuadratic method) (braintools.surrogate.QPseudoSpike method) (braintools.surrogate.ReluGrad method) (braintools.surrogate.S2NN method) (braintools.surrogate.Sigmoid method) (braintools.surrogate.SlayerGrad method) (braintools.surrogate.SoftSign method) (braintools.surrogate.SquarewaveFourierSeries method) Switch (class in braintools.cogtask) SynapticClustering (class in braintools.conn) SynapticPlacement (class in braintools.conn) T t_end (braintools.input.Chirp attribute) (braintools.input.DoubleExponential attribute) (braintools.input.ExponentialDecay attribute) (braintools.input.NoisySinusoidal attribute) (braintools.input.OUProcess attribute) (braintools.input.Poisson attribute) (braintools.input.Ramp attribute) (braintools.input.Sawtooth attribute) (braintools.input.Sinusoidal attribute) (braintools.input.Square attribute) (braintools.input.Triangular attribute) (braintools.input.WienerProcess attribute) t_start (braintools.input.Chirp attribute) (braintools.input.DoubleExponential attribute) (braintools.input.ExponentialDecay attribute) (braintools.input.NoisySinusoidal attribute) (braintools.input.OUProcess attribute) (braintools.input.Poisson attribute) (braintools.input.Ramp attribute) (braintools.input.Sawtooth attribute) (braintools.input.Sinusoidal attribute) (braintools.input.Square attribute) (braintools.input.Triangular attribute) (braintools.input.WienerProcess attribute) take() (in module braintools.tree) Task (class in braintools.cogtask) tau (braintools.input.ExponentialDecay attribute) (braintools.input.OUProcess attribute) tau_decay (braintools.input.DoubleExponential attribute) tau_rise (braintools.input.DoubleExponential attribute) TemporalEncoder (class in braintools) Test (class in braintools.cogtask) theta_gamma_coupling (class in braintools.metric) TimeShifted (class in braintools.input) to_dict() (braintools.optim.UniqueStateManager method) to_dict_value() (braintools.optim.UniqueStateManager method) to_pytree() (braintools.optim.UniqueStateManager method) to_pytree_value() (braintools.optim.UniqueStateManager method) TopographicProjection (class in braintools.conn) total_steps (braintools.cogtask.Context property) trajectory_3d (class in braintools.visualize) Transform (class in braintools.cogtask) Transformed (class in braintools.input) TransformIT (class in braintools.cogtask) trial_init() (braintools.cogtask.AntiReach method) (braintools.cogtask.ContextDecisionMaking method) (braintools.cogtask.DelayComparison method) (braintools.cogtask.DelayDirectionClassification method) (braintools.cogtask.DelayDirectionReproduction method) (braintools.cogtask.DelayMatchCategory method) (braintools.cogtask.DelayMatchSample method) (braintools.cogtask.DelayPairedAssociation method) (braintools.cogtask.DualDelayMatchSample method) (braintools.cogtask.EvidenceAccumulation method) (braintools.cogtask.GoNoGo method) (braintools.cogtask.HierarchicalReasoning method) (braintools.cogtask.ImmediateDirectionClassification method) (braintools.cogtask.ImmediateDirectionReproduction method) (braintools.cogtask.IntervalDiscrimination method) (braintools.cogtask.PerceptualDecisionMaking method) (braintools.cogtask.PerceptualDecisionMakingDelayResponse method) (braintools.cogtask.PostDecisionWager method) (braintools.cogtask.ProbabilisticReasoning method) (braintools.cogtask.PulseDecisionMaking method) (braintools.cogtask.Reaching1D method) (braintools.cogtask.ReadySetGo method) (braintools.cogtask.SingleContextDecisionMaking method) (braintools.cogtask.Task method) Triangular (class in braintools.input) triangular() (in module braintools.input) TruncatedNormal (class in braintools.init) TruncExp (class in braintools.cogtask) tuning_curve (class in braintools.visualize) U Uniform (class in braintools.init) UniformDuration (class in braintools.cogtask) UniqueStateManager (class in braintools.optim) unitary_LFP (class in braintools.metric) update() (braintools.cogtask.Context method) (braintools.optim.LBFGS method) (braintools.optim.OptaxOptimizer method) (braintools.optim.Optimizer method) update_state() (braintools.optim.UniqueStateManager method) V values (braintools.input.Section attribute) van_rossum_distance (class in braintools.metric) VariableDuration (class in braintools.cogtask) victor_purpura_distance (class in braintools.metric) violin_plot (class in braintools.visualize) voltage_fluctuation (class in braintools.metric) volume_rendering (class in braintools.visualize) von_mises() (in module braintools.cogtask) W wait_previous_save() (braintools.file.AsyncManager method) WarmupCosineSchedule (class in braintools.optim) WarmupScheduler (class in braintools.optim) Weibull (class in braintools.init) weight2csr() (braintools.conn.ConnectionResult method) weight2dense() (braintools.conn.ConnectionResult method) weight_scale() (braintools.conn.Connectivity method) weight_scaling() (braintools.init.ApplyProfile method) (braintools.init.ClipProfile method) (braintools.init.ComposedProfile method) (braintools.init.DistanceProfile method) (braintools.init.PipeProfile method) weighted_correlation (class in braintools.metric) While (class in braintools.cogtask) wiener_process() (in module braintools.input) WienerProcess (class in braintools.input) X XavierNormal (class in braintools.init) XavierUniform (class in braintools.init) Y Yogi (class in braintools.optim) Z ZeroInit (class in braintools.init)
